Man pages sections > man1 > fmix

fmix - Mixed parsimony algorithm

FMIX(1e) EMBOSS Manual for Debian FMIX(1e)

NAME

fmix - Mixed parsimony algorithm

SYNOPSIS

fmix -infile discretestates -intreefile tree [-weights properties] [-ancfile  properties] [-mixfile  properties] -method  list -njumble integer -seed integer [ -outgrno integer] [ -threshold  float] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean] [-ancseq  boolean] [-stepbox boolean]
fmix -help

DESCRIPTION

fmix is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

Input section

-infile discretestates
File containing one or more data sets
-intreefile tree
-weights properties
-ancfile properties
-mixfile properties

Additional section

-method list
Default value: Wagner
-njumble integer
-seed integer
Default value: 1
-outgrno integer
-threshold float
Default value: $(infile.discretesize)

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-ancseq boolean
Default value: N
-stepbox boolean
Default value: N

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fmix is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721