Man pages sections > man1 > fneighbor

fneighbor - Phylogenies from distance matrix by N-J or UPGMA method

FNEIGHBOR(1e) EMBOSS Manual for Debian FNEIGHBOR(1e)

NAME

fneighbor - Phylogenies from distance matrix by N-J or UPGMA method

SYNOPSIS

fneighbor -datafile distances [-matrixtype  list] [-treetype  list] -outgrno integer [-jumble toggle] -seed integer [ -replicates boolean] -outfile  outfile [-trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean]
fneighbor -help

DESCRIPTION

fneighbor is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Distance matrix" command group(s).

OPTIONS

Input section

-datafile distances

Additional section

-matrixtype list
Default value: s
-treetype list
Default value: n
-outgrno integer
-jumble toggle
Default value: N
-seed integer
Default value: 1
-replicates boolean
Default value: N

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fneighbor is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721