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forge - training program for SNAP

FORGE(1) User Commands FORGE(1)

NAME

forge - training program for SNAP

SYNOPSIS

forge [ options] <ann> <dna> [options]

OPTIONS

-help
-verbose
-pseudocount <float>
[1] (absolute number for all models)
-pseudoCoding <float> [0.0] (eg. 0.05)
-pseudoIntron <float> [0.0]
-pseudoInter <float>
[0.0]
-min-counts
[0]
-lcmask [-fragmentN]
-utr5-length <int>
[50]
-utr5-offset <int>
[10]
-utr3-length <int>
[50]
-utr3-offset <int>
[10]
-explicit <int>
[250]
-min-intron <int>
[30]
-boost <file>
(file of ID <int>)
October 2013 forge 2010-07-28