Man pages sections > man1 > fpars

fpars - Discrete character parsimony

FPARS(1e) EMBOSS Manual for Debian FPARS(1e)

NAME

fpars - Discrete character parsimony

SYNOPSIS

fpars -infile discretestates -intreefile tree [-weights properties] -method  list [-maxtrees integer] -thorough  toggle -rearrange boolean -njumble integer -seed integer [ -outgrno integer] [ -thresh toggle] -threshold float -outfile outfile [ -trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean] [-stepbox  boolean] [-ancseq boolean] -dotdiff boolean
fpars -help

DESCRIPTION

fpars is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).

OPTIONS

Input section

-infile discretestates
File containing one or more data sets
-intreefile tree
-weights properties

Additional section

-method list
Default value: Wagner
-maxtrees integer
Default value: 100
-thorough toggle
Default value: Y
-rearrange boolean
Default value: Y
-njumble integer
-seed integer
Default value: 1
-outgrno integer
-thresh toggle
Default value: N
-threshold float
Default value: 1

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-stepbox boolean
Default value: N
-ancseq boolean
Default value: N
-dotdiff boolean
Default value: Y

BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

fpars is fully documented via the tfm(1) system.

AUTHOR

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
 
08/11/2010 PHYLIPNEW 3.69+20100721