Man pages sections > man1 > fprotpars

fprotpars - Protein parsimony algorithm

FPROTPARS(1e) EMBOSS Manual for Debian FPROTPARS(1e)


fprotpars - Protein parsimony algorithm


fprotpars -sequence seqsetall -intreefile  tree [-weights properties] -njumble  integer -seed integer [ -outgrno integer] [ -thresh toggle] -threshold float [-whichcode list] -outfile outfile [-trout toggle] -outtreefile outfile [-printdata  boolean] [-progress  boolean] [-treeprint  boolean] [-stepbox  boolean] [-ancseq boolean] -dotdiff boolean
fprotpars -help


fprotpars is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).


Input section

-sequence seqsetall
File containing one or more sequence alignments
-intreefile tree
-weights properties

Additional section

-njumble integer
-seed integer
Default value: 1
-outgrno integer
-thresh toggle
Default value: N
-threshold float
Default value: 1
-whichcode list
Default value: Universal

Output section

-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-stepbox boolean
Default value: N
-ancseq boolean
Default value: N
-dotdiff boolean
Default value: Y


Bugs can be reported to the Debian Bug Tracking system (, or directly to the EMBOSS developers (


fprotpars is fully documented via the tfm(1) system.


Debian Med Packaging Team <>
Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
08/11/2010 PHYLIPNEW 3.69+20100721