Man pages sections > man1 > gapcleaner

gapcleaner - Find the most-parsimonious ordering of indels

GAPCLEANER(1) User Commands GAPCLEANER(1)

NAME

gapcleaner - Find the most-parsimonious ordering of indels

SYNOPSIS

gapcleaner <multi-FASTA or Stockholm alignment>

DESCRIPTION

gapcleaner from FSA 1.15.9
Find the most-parsimonious ordering of indels. Finds the minimal chain decomposition of the POSET of the alignment; this corresponds to minimizing the number of gap-openings across the sequences.
Input protein alignment must be in multi-FASTA or Stockholm format.

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
December 2015 gapcleaner 1.15.9