gapcleaner - Find the most-parsimonious ordering of indels
gapcleaner <multi-FASTA or Stockholm alignment>
gapcleaner from FSA 1.15.9
Find the most-parsimonious ordering of indels. Finds the minimal chain
decomposition of the POSET of the alignment; this corresponds to minimizing
the number of gap-openings across the sequences.
Input protein alignment must be in multi-FASTA or Stockholm format.
This manpage was written by Andreas Tille for the Debian distribution and can be
used for any other usage of the program.