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genome music bmr - Calculate gene coverages and background mutation rates.

GENOME-MUSIC-BMR(1p) User Contributed Perl Documentation GENOME-MUSIC-BMR(1p)

genome music bmr

NAME

genome music bmr - Calculate gene coverages and background mutation rates.

VERSION

This document describes genome music bmr version 0.04 (2016-01-01 at 17:57:59)

SYNOPSIS

genome music bmr ...

DESCRIPTION

These tools are part of the MuSiC suite.

SUB-COMMANDS

GENERAL

calc-bmr
Calculates mutation rates given per-gene coverage (from "music bmr calc-covg"), and a mutation list
calc-covg
Uses calcRoiCovg.c to count covered bases per-gene for each given tumor-normal pair of BAMs.
calc-covg-helper
Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair of BAMs.
calc-wig-covg
Count covered bases per-gene for each given wiggle track format file.

LICENSE

Copyright (C) 2010-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the associated LICENSE file in this distribution.

AUTHORS

 Cyriac Kandoth, Ph.D.

SEE ALSO

genome-music-bmr-calc-covg(1), genome-music-bmr-calc-bmr(1), genome-music(1), genome(1)
2016-01-01 perl v5.22.1