Bio::DB::SeqFeature::Store::berkeleydb3 -- Storage and retrieval of sequence
annotation data in Berkeleydb files
# Create a feature database from scratch
$db = Bio::DB::SeqFeature::Store->new( -adaptor => 'berkeleydb',
-dsn => '/var/databases/fly4.3',
-create => 1);
# get a feature from somewhere
my $feature = Bio::SeqFeature::Generic->new(...);
# store it
$db->store($feature) or die "Couldn't store!";
This is a faster version of the berkeleydb storage adaptor for
Bio::DB::SeqFeature::Store. It is used automatically when you create a new
database with the original berkeleydb adaptor. When opening a database created
under the original adaptor, the old code is used for backward compatibility.
Please see Bio::DB::SeqFeature::Store::berkeleydb for full usage instructions.
This is an early version, so there are certainly some bugs. Please use the
BioPerl bug tracking system to report bugs.
bioperl, Bio::DB::SeqFeature, Bio::DB::SeqFeature::Store,
Lincoln Stein <email@example.com>.
Copyright (c) 2009 Ontario Institute for Cancer Research
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself.