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Bio::DB::SoapEUtilities::FetchAdaptor::species - Fetch adaptor for 'taxonomy'

Bio::DB::SoapEUtilities::FetchAdaptor::species(3pm) User Contributed Perl Documentation Bio::DB::SoapEUtilities::FetchAdaptor::species(3pm)


Bio::DB::SoapEUtilities::FetchAdaptor::species - Fetch adaptor for 'taxonomy' efetch SOAP messages


Imported by Bio::DB::SoapEUtilities::FetchAdaptor as required.


Returns an iterator over Bio::Species objects:
 my $fac = Bio::DB::SoapEUtilities->new;
 my $taxio = $fac->efetch(-db => 'taxonomy', -id => 1394)->run(-auto_adapt=>1);
 my $sp = $taxio->next_species;
 $sp->binomial; # returns 'Bacillus caldolyticus'
To find out the object type returned:
 $class = $seqio->obj_class; # $class is 'Bio::Species'
as for all Bio::DB::SoapEUtilities::FetchAdaptor objects.


Bio::DB::SoapEUtilities, Bio::DB::SoapEUtilities::FetchAdaptor


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AUTHOR - Mark A. Jensen

Email maj -at- fortinbras -dot- us


The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
2017-09-20 perl v5.26.0