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Bio::Graphics::Browser2::PluginSet -- A set of plugins

Bio::Graphics::Browser2::PluginSet(3pm) User Contributed Perl Documentation Bio::Graphics::Browser2::PluginSet(3pm)

NAME

Bio::Graphics::Browser2::PluginSet -- A set of plugins

SYNOPSIS

None. Used internally by gbrowse & gbrowse_img.

METHODS

$plugin_set = Bio::Graphics::Browser2::PluginSet->new($config,$page_settings,@search_path)
Initialize plugins according to the configuration, page settings and the plugin search path. Returns an object.
$plugin_set->configure($database)
Configure the plugins given the database.
$plugin_set->annotate($segment,$feature_files,$rel2abs)
Run plugin annotations on the $segment, adding the resulting feature files to the hash ref in $feature_files ({track_name=>$feature_list}). The $rel2abs argument holds a coordinate mapper callback, but is currently unused.

SEE ALSO

Bio::Graphics::Browser2

AUTHOR

Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2005 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
2014-07-10 perl v5.18.2