Man pages sections > man3 > Bio::Roary::External::Makeblastdb

Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

Bio::Roary::External::Makeblastdb(3pm) User Contributed Perl Documentation Bio::Roary::External::Makeblastdb(3pm)

NAME

Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

VERSION

version 3.11.0

SYNOPSIS

Take in a fasta file and create a temporary blast database.
   use Bio::Roary::External::Makeblastdb;
   
   my $blast_database= Bio::Roary::External::Makeblastdb->new(
     fasta_file => 'contigs.fa',
     exec       => 'makeblastdb'
   );
   
   $blast_database->run();

METHODS

output_database

Returns the path to the temporary blast database files

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk> This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
  The GNU General Public License, Version 3, June 2007
2017-10-11 perl v5.26.0