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Bio::Roary::External::Mcl - Wrapper around MCL which takes in blast results and

Bio::Roary::External::Mcl(3pm) User Contributed Perl Documentation Bio::Roary::External::Mcl(3pm)

NAME

Bio::Roary::External::Mcl - Wrapper around MCL which takes in blast results and outputs clustered results

VERSION

version 3.11.0

SYNOPSIS

Wrapper around MCL which takes in blast results and outputs clustered results
   use Bio::Roary::External::Mcl;
   
   my $mcl= Bio::Roary::External::Mcl->new(
     blast_results     => 'db',
     mcxdeblast_exec   => 'mcxdeblast',
     mcl_exec          => 'mcl',
     output_file       => 'output.groups'
   );
   
   $mcl->run();

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk> This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
  The GNU General Public License, Version 3, June 2007
2017-10-11 perl v5.26.0