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Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds,

Bio::Roary::IterativeCdhit(3pm) User Contributed Perl Documentation Bio::Roary::IterativeCdhit(3pm)

NAME

Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each time

VERSION

version 3.11.0

SYNOPSIS

Run CDhit iteratively with reducing thresholds, removing full clusters each time
use Bio::Roary::IterativeCdhit;
   my $obj = Bio::Roary::IterativeCdhit->new(
     output_cd_hit_filename   => 'output_cd_hit_filename.fa',
     output_combined_filename => 'output_combined_filename.fa',
     number_of_input_files     => 5,
     output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
   );
   $obj->run;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk> This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
  The GNU General Public License, Version 3, June 2007
2017-10-11 perl v5.26.0