Man pages sections > man3 > Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL

Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for

Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm) User Contributed Perl Documentation Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL(3pm)

NAME

Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL - Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes

VERSION

version 3.11.0

SYNOPSIS

Create an embl file for the header with locations of where genes are in the multifasta alignment of core genes
use Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL;
   my $obj = Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL->new(
        output_filename => 'core_alignment_header.embl',
        multifasta_files => [
            't/data/multifasta_files/1.aln', 't/data/multifasta_files/outof_order.aln',
            't/data/multifasta_files/2.aln', 't/data/multifasta_files/3.aln'
        ],
        gene_lengths => {
            't/data/multifasta_files/1.aln'           => 1,
            't/data/multifasta_files/outof_order.aln' => 10,
            't/data/multifasta_files/2.aln'           => 100,
            't/data/multifasta_files/3.aln'           => 1000
        },
   );
   $obj->create_file;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk> This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
  The GNU General Public License, Version 3, June 2007
2017-10-11 perl v5.26.0