Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of
Do not use this object directly, it is recommended to access it and use it
through the Bio::Tools::Run::AnalysisFactory
my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
print join ("\n", @$list) . "\n";
All public methods are documented in the interface module
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Martin Senger (firstname.lastname@example.org)
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the
same terms as Perl itself.
This software is provided "as is" without warranty of any kind.
None known at the time of writing this.
The main documentation details are in "Bio::Factory::AnalysisI".
Usage : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
(_initialize is internally called from the 'new()' method)
Returns : nothing interesting
Args : This module recognises and uses following arguments:
Additionally, the main module Bio::Tools::Run::AnalysisFactory
It populates calling object with the given arguments, and then - for some
attributes and only if they are not yet populated - it assigns some default
This is an actual new()
method (except for the real object creation and
its blessing which is done in the parent class Bio::Root::Root in method
Note that this method is called always as an object
method (never as a
method) - and that the object who calls this method may already
be partly initiated (from Bio::Tools::Run::AnalysisFactory::new method); so if
you need to do some tricks with the 'class invocation' you need to change
method, not this one.
- A URL (also called an endpoint) defining where is
located a Web Service functioning for this object.
Default is "http://www.ebi.ac.uk/soaplab/services" (a service
running at European Bioinformatics Institute on top of most of the EMBOSS
analyses, and on top of few others).
For example, if you run your own Web Service using Java(TM) Apache Axis
toolkit, the location might be something like
- In addition to the location parameter, you may need
to specify also a location/URL of an HTTP proxy server (if your site
requires one). The expected format is "http://server:port".
There is no default value.
- Defines your own SOAP::Lite object. Useful if you need
finer-grained access to many features and attributes of the wonderful Paul
Usage : print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;