Man pages sections > man7 > mclfamily


mcl(7) MISCELLANEOUS mcl(7)

NAME


mclfamily - a description of the mcl family of cluster applications.
 
mcl is an implementation of the Markov Cluster Algorithm, aka MCL algoritm. It is described in the mcl manual. Several other applications are part of the MCL distribution. This manual pages gives an overview.

DESCRIPTION


 
 

mcl(1) the cluster algorithm
 

mclfaq(7) MCL Frequently Asked Questions
 

mcxio(5) the network/matrix input/output format
 

mcx(1) general network/matrix tasks
 

mcx diameter compute diameter of an undirected network
 

mcx ctty compute betweenness centrality
 

mcx clcf compute clustering coefficient
 

mcx erdos compute shortest paths in graphs
 

mcx query analyse networks at different thresholds
 

mcx alter apply network transformations
 

mcx convert convert between interchange/binary storage types
 

mcxarray(1) transform array data to MCL matrices
 

mcxdump(1) dump a matrix optionally with label substitions
 

mcxload(1) load label data into matrix and tab files
 

mcxrand(1) randomly remove, add, and perturb edge weights
 

mcxmap(1) relabel indices in a graph/matrix
 

mcxsubs(1) extracting submatrices in various ways
 

mcxi(1) general matrix operations
 

mcxassemble(1) create matrices from raw data
 

clm(1) general graph-clustering related tasks
 

clm dist compute split/join distance between clusterings
 

clm vol derive node volatility scores from a set of clusterings
 

clm info compute performance measure for clusterings
 

clm meet compute intersection of clusterings
 

clm mate find best matching clusters between clusterings
 

clm close fetch connected components from graphs or subgraphs
 

clm imac interpret MCL iterand/matrix as clustering
 

clm order reorder indices to represent blocks from different clusterings
 

clm residue extend subgraph clustering
 

clmformat(1) display clusters as html or txt files
 

mclpipeline(1) parsing/assembly/clustering/display
 

mclblastline(1) * BLAST pipeline
 

mcxdeblast(1) * parse BLAST files
 
Entries marked * are not available if only a default install is done.
16 May 2014 mcl 14-137