openms-doc - library for LC/MS data management and analysis - documentation
This manual page documents briefly the openms-doc
package that brings a
full set of documentation and tutorials to the OpenMS software framework.
OpenMS offers an infrastructure for the development of mass
spectrometry-related software and powerful 2D and 3D visualization solutions.
OpenMS offers analyses for various quantitation protocols, including
label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It provides build-in
algorithms for de-novo identification and database search, as well as adapters
to other state-of-the art tools like X!Tandem, Mascot, OMSSA… OpenMS
supports the Proteomics Standard Initiative (PSI) formats for MS data and
supports easy integration of tools into workflow engines like Knime, Galaxy,
WS-Pgrade, and TOPPAS via the TOPPtools concept and a unified parameter
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene
Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut
Reinert, and Oliver Kohlbacher (2008) OpenMS – an Open-Source Software
Framework for Mass Spectrometry. BMC Bioinformatics
This manual page was written by Filippo Rusconi <email@example.com>.
Permission is granted to copy, distribute and/or modify this document under
the terms of the GNU General Public License, Version 3, published by the Free
On a Debian system the complete text of the GNU General Public License version
3 can be found in the file ` /usr/share/common-licenses/GPL-3