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sinfo_rec_mflat - Master flat determination

SINFO_REC_MFLAT(7) sinfo recipes SINFO_REC_MFLAT(7)

NAME

sinfo_rec_mflat - Master flat determination
 

SYNOPSIS

esorex sinfo_rec_mflat [OPTIONS] FILE.sof
 

DESCRIPTION

This recipe reduce normal raw flat fields.
The input files are a set of flat fields with tag FLAT_LAMP optionally one may have in input also several bad pixel maps to be coadded.
The main products are a master flat field (PRO.CATG=MASTER_FLAT_LAMP) image a bad pixel map (PRO.CATG=BP_MAP_NO), a master bad pixel map (PRO.CATG=MASTER_BP_MAP) resulting by the coaddition of all bad pixel maps.

OPTIONS

--gen-overpar <bool>
Overwrite DRS ini parameters: (bool; default: True). The full name of this option for the EsoRex configuration file is sinfoni.general.overwrite_parameters [default = True].
--lc_sw <bool>
Correct for bad lines introduced by instrument software: (bool; default: False). The full name of this option for the EsoRex configuration file is sinfoni.general.lc_sw [default = False].
--lc_kappa <long>
Kappa sigma value (long; default: 18). The full name of this option for the EsoRex configuration file is sinfoni.general.lc_kappa [default = 18].
--lc_filt_rad <long>
Filtering radii applied during median filter. Should be small (long; default: 3). The full name of this option for the EsoRex configuration file is sinfoni.general.lc_filt_rad [default = 3].
--product-density <long>
Density of pipeline products: 0 (low), 1 (low+skycor), 2 (med-QC), 3 (high-debug+skycor) (long; default: 2). The full name of this option for the EsoRex configuration file is sinfoni.product.density [default = 2].
--bp_norm-s_factor <float>
Threshold Sigma Factor: to remove the column intensity tilt only pixels which lie within a defined noiselimit are used to fit a straight line (float; default: 5.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.sigma_factor [default = 5.0].
--bp_norm-method_ind <long>
Bad pixel Method Index1: median of nearest neighbors,2: absolute distances check, 3: mean of nearest spectral neighbors (long; default: 1). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.method_index [default = 1].
--bp_norm-fct <float>
Factor: if |pixel - median| > factor * standard deviation -> then the pixel value is replaced by the median of the 8 nearest neighbors (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.factor [default = 10.0].
--bp_norm-it <long>
Iterations: number of iterations to of median filtering to find bad pixel clusters (long; default: 8). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.iterations [default = 8].
--bp_norm-lo_rej <float>
low_rejection: percentage of rejected low intensity pixels before averaging (float; default: 0.1). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.low_rejection [default = 0.1].
--bp_norm-hi_rej <float>
high_rejection: percentage of rejected high intensity pixels before averaging (float; default: 0.1). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.high_rejection [default = 0.1].
--bp_norm-llx <long>
llx: to compute image statistics on a rectangularzone of the image the coordinates of the rectangle are needed:lower left x coordinate (long; default: 270). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.llx [default = 270].
--bp_norm-lly <long>
lly: to compute image statistics on a rectangularzone of the image the coordinates of the rectangle are needed:lower left y coordinate (long; default: 1000). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.lly [default = 1000].
--bp_norm-urx <long>
urx: to compute image statistics on a rectangularzone of the image the coordinates of the rectangle are needed:upper right x coordinate (long; default: 310). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.urx [default = 310].
--bp_norm-ury <long>
ury: to compute image statistics on a rectangularzone of the image the coordinates of the rectangle are needed:upper right y coordinate (long; default: 1200). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.ury [default = 1200].
--bp_norm-thr_ind <bool>
Threshold Index: indicator that indicates if the values beyond a threshold deviation from the mean are flagged as bad pixels (bool; default: True). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.threshold_index [default = True].
--bp_norm-mean_fct <float>
Mean Factor: factor to the clean standard deviation to define the threshold deviation from the clean mean (float; default: 100.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.mean_factor [default = 100.0].
--bp_norm-min_cut <float>
the minimum value of real data (float; default: 0.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.min_cut [default = 0.0].
--bp_norm-max_cut <float>
the minimum value of real data (float; default: 50000.0). The full name of this option for the EsoRex configuration file is sinfoni.bp_norm.max_cut [default = 50000.0].
--lamp_flats-lo_rej <float>
lower rejection: percentage of rejected low intensity pixels before averaging (float; default: 0.1). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.low_rejection [default = 0.1].
--lamp_flats-hi_rej <float>
high rejection: percentage of rejected high intensity pixels before averaging (float; default: 0.1). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.high_rejection [default = 0.1].
--lamp_flats-interpol_index <bool>
Interpolation index switch: indicator if the bad pixels of the flatfield should be interpolated (bool; default: False). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.interpol_index [default = False].
--lamp_flats-max_rad <long>
Max Rad: maximal pixel distance from bad pixel to take valid pixels (long; default: 4). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.max_rad [default = 4].
--lamp_flats-bad_ind <bool>
indicator if a bad pixel mask should be generated or not (bool; default: False). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.bad_ind [default = False].
--lamp_flats-sigma_factor <float>
Sigma Factor: factor of the sigma noise limit; to remove the column intensity tilt only pixels which lie within a defined noise limit are used to fit a straight line (float; default: 5.0). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.sigma_factor [default = 5.0].
--lamp_flats-factor <float>
Factor: if |pixel - median| > factor * standard deviation -> then the pixel value is replaced by the median of the 8 nearest neighbors (float; default: 3.0). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.factor [default = 3.0].
--lamp_flats-iterations <long>
Iterations: number of iterations to of median filtering to find bad pixel clusters (long; default: 8). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.iterations [default = 8].
--lamp_flats-bad_lo_rej <float>
low rejection: Percentage for bad pixel low rejection (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.bad_low_rejection [default = 10.0].
--lamp_flats-bad_hi_rej <float>
high rejection: Percentage for bad pixel high rejection (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.bad_high_rejection [default = 10.0].
--lamp_flats-llx <long>
Lower Lext X corner (long; default: 1350). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.llx [default = 1350].
--lamp_flats-lly <long>
Lower Lext Y corner (long; default: 1000). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.lly [default = 1000].
--lamp_flats-rrx <long>
Upper right X corner (long; default: 1390). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.urx [default = 1390].
--lamp_flats-ury <long>
Upper right Y corner (long; default: 1200). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.ury [default = 1200].
--lamp_flats-tresh_ind <bool>
Treshold index: (bool; default: False). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.thresh_ind [default = False].
--lamp_flats-mean_factor <float>
Mean Factor: factor to the clean standard deviation to define the threshold deviation from the clean mean (float; default: 10.0). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.mean_factor [default = 10.0].
--lamp_flats-qc_fpn_xmin1 <long>
qc_fpn_xmin1 (long; default: 512). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_xmin1 [default = 512].
--lamp_flats-qc_fpn_xmax1 <long>
qc_fpn_xmax1 (long; default: 1536). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_xmax1 [default = 1536].
--lamp_flats-qc_fpn_ymin1 <long>
qc_fpn_ymin1 (long; default: 512). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_ymin1 [default = 512].
--lamp_flats-qc_fpn_ymax1 <long>
qc_fpn_ymax1 (long; default: 1536). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_ymax1 [default = 1536].
--lamp_flats-qc_fpn_xmin2 <long>
qc_fpn_xmin2 (long; default: 1350). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_xmin2 [default = 1350].
--lamp_flats-qc_fpn_xmax2 <long>
qc_fpn_xmax2 (long; default: 1390). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_xmax2 [default = 1390].
--lamp_flats-qc_fpn_ymin2 <long>
qc_fpn_ymin2 (long; default: 1000). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_ymin2 [default = 1000].
--lamp_flats-qc_fpn_ymax2 <long>
qc_fpn_ymax2 (long; default: 1200). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_fpn_ymax2 [default = 1200].
--lamp_flats-qc_thresh_min <long>
qc_thresh_min (long; default: 0). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_thresh_min [default = 0].
--lamp_flats-qc_thresh_max <long>
qc_thresh_max (long; default: 49000). The full name of this option for the EsoRex configuration file is sinfoni.lamp_flats.qc_thresh_max [default = 49000].
 
Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.
 

SEE ALSO

The full documentation for the sinfo pipeline can be downloaded as a PDF file using the following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/sinfoni/sinfo-pipeline-manual-19.0.pdf
An overview over the existing ESO pipelines can be found on the web page http://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See http://packages.python.org/python-cpl/index.html for further information.
The other recipes of the sinfo pipeline are sinfo_rec_detlin(7), sinfo_rec_distortion(7), sinfo_rec_jitter(7), sinfo_rec_mdark(7), sinfo_rec_pupil(7), sinfo_rec_wavecal(7), sinfo_utl_bp_mask_add(7), sinfo_utl_cube2ima(7), sinfo_utl_cube2spectrum(7), sinfo_utl_cube_arith(7), sinfo_utl_cube_combine(7), sinfo_utl_cube_create(7), sinfo_utl_ima_arith(7), sinfo_utl_ima_line_corr(7), sinfo_utl_line_oh_select(7), sinfo_utl_skycor(7), sinfo_utl_skymap(7), sinfo_utl_spectrum_divide_by_blackbody(7), sinfo_utl_spectrum_wavelength_shift(7)
 

VERSION

sinfo_rec_mflat 3.0.0
 

AUTHOR

Andrea Modigliani <Andrea.Modigliani@eso.org>
 

BUG REPORTS

Please report any problems to Andrea.Modigliani@eso.org. Alternatively, you may send a report to the ESO User Support Department <usd-help@eso.org>.
 

LICENSE

This file is part of the SINFONI Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory
 
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
 
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
 
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
3.0.0 sinfo_rec_mflat